miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|33409609|gb|CF215236.1|CF215236 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAGCATAAAATAGTGATTGAACTTCACACACATGAAGCTCTGTATGATAG
CTTAAATCTTAAAATTGTATATATAGAGTACAGCAACTGTATATGAAAGAGCTCATCAGTAAAATATAGCACACTGGCTT
CCTGTCTAGAATGCATAGCATCATGAGCAATCACCCTTAGAAATTAGCAGAGTGACTGCTCATGATATTATCTCATTCCA
TGAAAGCTTGAGCATGCTACACAGCCACACATGTACCGCGGATCAAAACCCTCCACCGAGAGCCGGAGACCAATAATCGG
CTCCATTGTCACTTCCAACCTGCTGAGTGCACGAAACCGGAACCAGGCACAACCCTCTACTCTTCAAGTCCTTTGGTGCA
TCTTGTGTATCCTGCTGATTAGGTGCTGATCCTTTTCTTTTGAGGCAGTTGTCGTTCAGGAGCTGACCAGGGTCTTTGGG
AAATATACAATTCATTTCGCCTTGAACACACTGTTGGTTCCTCATGTTTCCTGATGCATTGCCCAAGTACGGAGAGCTAA
GGGCCTCAATTTGACCCTGAAGGAATCTGATATACCCAATAGCTTCTAACAAGACAGAAGCAGTGTCAGTCTTTCCAAAT
GGGGAAACTAACTGGTGAAGGGCTGTTATTCTATCACCCAGCTTCTCCTTTCTCACCTTTAGTGGTGGTTGGCTCGGAGA
GGGTTGAACCCTAACCTTTTTACATGCCCCACCAGTCTCCGTGCTGTTACACTCAGTTGAATGATCTGCATGTTGAT




Most similar to sp|Q8S3D1|BH068_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q8S3D1|BH068_ARATH Transcription factor bHLH68 OS=Arabidopsis
           thaliana GN=BHLH68 PE=2 SV=2
          Length = 407

 Score =  238 bits (607), Expect = 4e-62
 Identities = 123/171 (71%), Positives = 141/171 (82%), Gaps = 7/171 (4%)
 Frame = -3

Query: 786 DHSTECNSTETGGAC-KKVRVQPSPS-QPPLKVRKEKLGDRITALHQLVSPFGKTDTASV 613
           D S+ECNS E GG+  KK R+QPSPS Q  LKVRKEKLG RI ALHQLVSPFGKTDTASV
Sbjct: 232 DRSSECNSLEIGGSTNKKPRLQPSPSSQSTLKVRKEKLGGRIAALHQLVSPFGKTDTASV 291

Query: 612 LLEAIGYIRFLQGQIEALSSPYLG-NASGNMRNQQCVQGEMNCIFPKDPGQLLNDNCLKR 436
           L EAIGYIRFLQ QIEALS PY G  ASGNMR+QQ +QG+ +CIFP+DPGQL+ND C+KR
Sbjct: 292 LSEAIGYIRFLQSQIEALSHPYFGTTASGNMRHQQHLQGDRSCIFPEDPGQLVNDQCMKR 351

Query: 435 KGSAPNQQDTQDA----PKDLKSRGLCLVPVSCTQQVGSDNGADYWSPALG 295
           +G++ +  D Q+A     KDL+SRGLCLVP+SCT QVGSDNGADYW+PALG
Sbjct: 352 RGASSSSTDNQNASEEPKKDLRSRGLCLVPISCTLQVGSDNGADYWAPALG 402